Speaking to reporters after the hearing, Mr Chabrowe called the case “a complex matter for both India and the US”.
He said people should refrain from “jumping to conclusions” about the allegations against Mr Gupta.
“We will pursue his defense rigorously,” he said.
Mr Gupta’s hearing was also attended by several Khalistan activists, including one who held the movement’s flag outside the courthouse.
Mr Gupta is scheduled to appear in court again on 28 June.
In November, US prosecutors charged Mr Gupta with a plot to kill at least four Sikh separatists in North America, including Mr Pannun. The charges against him carry up to 20 years in prison.
Mr Gupta paid $100,000 (£79,000) in cash to a hitman to assassinate Mr Pannun, prosecutors said. The hitman, they added, was an undercover federal agent.
Mr Pannun is a dual US-Canadian citizen living in New York.
He is the general counsel for Sikhs for Justice, an organisation based in the US that supports the broader Khalistan movement, which calls for an independent homeland for Sikhs, who make up about 2% of India’s population.
Mr Pannun was designated a terrorist by the Indian government in 2020, an allegation he denies.
He was also an associate of Hardeep Singh Nijjar, a Sikh separatist leader who was shot dead in Canada in his car last year.
The murder led to a deterioration in India-Canada ties after Canadian Prime Minister Justin Trudeau alleged there were “credible allegations” that Delhi had been involved. India denied the accusations.
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Let us stop discrimination, for it will tear the world apart.